PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK09834.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NF-YC
Protein Properties Length: 241aa    MW: 26180.2 Da    PI: 5.2456
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK09834.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1789.2e-56561592102
      NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                l++fw++q   ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflvdivpr
  PK09834.1  56 LQMFWTYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPR 155
                89****998899**************************************************************************************** PP

      NF-YC  99 delk 102
                de+k
  PK09834.1 156 DEIK 159
                *975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.51E-3346149IPR009072Histone-fold
PfamPF008081.7E-2077140IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.107.3E-3778155IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0010468Biological Processregulation of gene expression
GO:0048586Biological Processregulation of long-day photoperiodism, flowering
GO:0051247Biological Processpositive regulation of protein metabolic process
GO:2000905Biological Processnegative regulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDGNNNSNSN TTNPSSSINT QQHLQTSPYP ATGAGGVVPA APAPFHHLLQ QQQQHLQMFW  60
TYQRQEIEQV NDFKNHQLPL ARIKKIMKAD EDVRMISAEA PILFAKACEL FILELTIRSW  120
LHAEENKRRT LQKNDIAAAI TRTDIFDFLV DIVPRDEIKE EAALGGMVGT TASGVPYYYP  180
PMGQPAGAPG GMMIGRPAVD PSGVYGQPPS QAWQSVWQSA ADDGSYGSGG SSGQGNLDGQ  240
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_C5e-445615519119HapE
4g91_C5e-445615519119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127133RRTLQKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138046.11e-130PREDICTED: nuclear transcription factor Y subunit C-1-like
RefseqXP_008464428.11e-130PREDICTED: nuclear transcription factor Y subunit C-1
SwissprotQ9FMV51e-113NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBLA0A0A0LNK71e-130A0A0A0LNK7_CUCSA; Uncharacterized protein
STRINGfgenesh2_kg.5__1209__AT3G48590.11e-114(Arabidopsis lyrata)
STRINGPOPTR_0015s10940.11e-114(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110713038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.22e-85nuclear factor Y, subunit C4